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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60505437_60516157_R

Intron Information:

Intron Rank:
154646
Intron Class:
major
Intron Phase:
Intron Coordinates:
60505437 - 60516157
Intron Length:
10721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGTGACT
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAA
U12 Branch Point Sequence:
TAAGCAAAAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
59.8
44.6
Major BPS
48.5
-0
1.4
58
38.9
Major PPT
83.7
0.76
0.7
76.7
32
Minor 5ss
33.1
-1.9
3.4
40.9
45.2
Minor BPS
37
-1
2.2
46.49
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030781
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020575
60503987 - 60516298
12312