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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60647254_60651490_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60647254 - 60651490
Intron Length:
4237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCTGGACA
Flanking Amino Acid:
FSEPTTKSWEIITVEEAKRR
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.9
0.56
0.8
73.7
31.4
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
60
0.31
1.5
67.26
39.1

Associated Gene:

Gene:
NCOA7
Ensembl Gene ID:
ENSAPLG00000002790
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025921
60626085 - 60654986
28902
ENSAPLT00000002869
60588877 - 60654986
66110