Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60651617_60652066_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60651617 - 60652066

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGCTG

5'SS Class:

major

3'SS Sequence:

GTTCACTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

AAATACGTAACC

Flanking Amino Acid:

ALLENMHIEQLAQRLPARVQ

Intron Amino Acid Position:

805

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

64.5

46.9

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

66.6

0.37

57.8

42.8

Minor 5ss

33.3

-1.9

3.6

46.8

48.5

Minor BPS

49.9

-0

2.2

64.33

40.4

Associated Gene:

Gene:

NCOA7

Ensembl Gene ID:

ENSAPLG00000002790

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025921

60626085 - 60654986

28902

ENSAPLT00000002869

60588877 - 60654986

66110