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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60658054_60659271_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60658054 - 60659271
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTGTATCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATTACTTAAAT
Flanking Amino Acid:
KTLKSEHIPIVKRMMEVGKS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.4
0.55
0.9
69.3
36.7
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
73.6
0.82
1.6
88.19
35.8

Associated Gene:

Gene:
HINT3
Ensembl Gene ID:
ENSAPLG00000024907
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043516
60657287 - 60660382
3096
ENSAPLT00000033331
60657287 - 60662317
5031