About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60659342_60660168_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60659342 - 60660168
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTCTAACCT
Flanking Amino Acid:
RNNFNDLNDIRMGFHWPPFC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.4
0.68
0.9
82.9
26
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
58.3
0.34
2
79.89
42.3

Associated Gene:

Gene:
HINT3
Ensembl Gene ID:
ENSAPLG00000024907
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043516
60657287 - 60660382
3096
ENSAPLT00000033331
60657287 - 60662317
5031