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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60671142_60671869_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60671142 - 60671869
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTCTATTT
Flanking Amino Acid:
FSNQQEIRVNSPFWILNIPS
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
49.1
0.02
1.9
71.32
40.7

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903