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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60671944_60673640_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60671944 - 60673640
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TCTTACTGCACT
Flanking Amino Acid:
RGIMKRTVCAKSIFELWGHG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
37.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
80.8
0.69
0.9
77.7
40.6
Minor 5ss
33.9
-1.8
3.5
47.6
42.4
Minor BPS
52.9
0.17
2.1
77.85
44.1

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903