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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60673723_60673811_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60673723 - 60673811
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCATG
5'SS Class:
major
3'SS Sequence:
GCCATGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GCTGTACTAATG
Flanking Amino Acid:
SLKNYPMDRMLPYLQPDSTY
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.1
43.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.8
0.51
1
68.3
42.1
Minor 5ss
49.2
-0
2.5
62.7
43.2
Minor BPS
42.4
-0.7
1.9
45.15
41.5

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903