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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60673905_60674588_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60673905 - 60674588
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAGAAT
U12 Branch Point Sequence:
TGACCTAGAATG
Flanking Amino Acid:
TQAQKIKKIDALEFLPFNGK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
50.5
0.01
1.5
61.7
41.5
Major PPT
86.7
0.83
0.8
84.9
29.9
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
45
-0.5
1.7
48.74
38.4

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903