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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60674724_60676392_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60674724 - 60676392
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGTAAG
5'SS Class:
major
3'SS Sequence:
AATCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATCTTTCAACA
Flanking Amino Acid:
EPFDLYFGRWIADGQRELIE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
65.1
42.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.8
0.49
1
66.7
38.5
Minor 5ss
28.1
-2.5
2.7
24.3
37.1
Minor BPS
55.8
0.18
1.5
64.53
35.2

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903