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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60680554_60681194_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60680554 - 60681194
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
TTGCTGTTGAGG
Flanking Amino Acid:
DIDYNTIHGLGKASRKNQKW
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
85.9
0.81
0.7
84.4
23.4
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
42.9
-0.7
2.3
50.88
44

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903