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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60681360_60682730_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60681360 - 60682730
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTGCTTTGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATCCCTGCACT
Flanking Amino Acid:
GMLFDAIITDPPYGIREATR
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
71.5
41.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76
0.58
0.9
72.4
37.8
Minor 5ss
45.3
-0.5
2.8
58.9
40.2
Minor BPS
51.8
0.14
2
71.78
44.5

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903