Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60682804_60683496_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60682804 - 60683496

Intron Length:

693

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTGTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTATGTTTACAC

Flanking Amino Acid:

QKESVKSAEGSTENPVFISS

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

77.9

38.6

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

87.7

0.85

0.8

88.9

28.2

Minor 5ss

38.7

-1.3

2.8

47.8

47.9

Minor BPS

48.2

-0.1

2.1

41.7

Associated Gene:

Gene:

TRMT11

Ensembl Gene ID:

ENSAPLG00000002183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002397

60670007 - 60694909

24903