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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60683629_60687512_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60683629 - 60687512
Intron Length:
3884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTATTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGTTCATGAGCT
Flanking Amino Acid:
LVYWLPIYRPEYTEEIIPRH
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
71.6
38.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
47.7
-0.2
2.4
59.4
39.2
Minor BPS
50.6
0.1
2
74.15
41.7

Associated Gene:

Gene:
TRMT11
Ensembl Gene ID:
ENSAPLG00000002183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002397
60670007 - 60694909
24903