Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60856234_60858021_R

Intron Information:

Intron Rank:

150223

Intron Class:

major

Intron Phase:

Intron Coordinates:

60856234 - 60858021

Intron Length:

1788

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTCACT

5'SS Class:

major

3'SS Sequence:

GTTTTCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TCTTTCTGAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.1

68.4

42.4

Major BPS

82.1

0.8

71.6

36.4

Major PPT

88.1

0.86

0.7

85.4

29.3

Minor 5ss

-1

3.1

59.2

44.9

Minor BPS

0.7

1.4

78.77

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030656

60844735 - 60858295

13561