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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60856234_60859370_R

Intron Information:

Intron Rank:
150224
Intron Class:
major
Intron Phase:
Intron Coordinates:
60856234 - 60859370
Intron Length:
3137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
73
0.7
1.4
78.77
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042025
60856018 - 60859707
3690