About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60858511_60859370_R

Intron Information:

Intron Rank:
150220
Intron Class:
major
Intron Phase:
Intron Coordinates:
60858511 - 60859370
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026948
60858362 - 60859707
1346