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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60957620_60960877_F

Intron Information:

Intron Rank:
129449
Intron Class:
major
Intron Phase:
Intron Coordinates:
60957620 - 60960877
Intron Length:
3258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
GTTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.6
35.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.2
0.88
0.7
83.7
31.3
Minor 5ss
30
-2.3
2.7
36.7
40.4
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019633
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040368
60957451 - 60961166
3716