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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60957620_60961725_F

Intron Information:

Intron Rank:
129448
Intron Class:
major
Intron Phase:
Intron Coordinates:
60957620 - 60961725
Intron Length:
4106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TGTTTTCCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.6
35.7
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
82.1
0.72
0.8
76.9
32
Minor 5ss
30
-2.3
2.7
36.7
40.4
Minor BPS
43.4
-0.5
2.1
60.42
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019633
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027368
60957451 - 60962802
5352