Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61054873_61056745_F

Intron Information:

Intron Rank:

148062

Intron Class:

major

Intron Phase:

Intron Coordinates:

61054873 - 61056745

Intron Length:

1873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

CACTTTCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTTAC

U12 Branch Point Sequence:

TGTCACAGAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

64.9

0.37

0.9

55.4

32.3

Major PPT

71.6

0.49

65.1

40.9

Minor 5ss

41.2

-1

2.9

54.6

44.5

Minor BPS

44.2

-0.4

1.9

58.94

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029717

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023522

61054044 - 61056932

2889