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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61058930_61060050_F

Intron Information:

Intron Rank:
135028
Intron Class:
major
Intron Phase:
Intron Coordinates:
61058930 - 61060050
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.2
0.88
0.7
85
29.8
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
54.5
0.22
1.7
73.23
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042880
61058487 - 61063914
5428