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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61060124_61063525_F

Intron Information:

Intron Rank:
135029
Intron Class:
major
Intron Phase:
Intron Coordinates:
61060124 - 61063525
Intron Length:
3402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
TCTTTCTACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTTTCTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79.9
0.67
0.8
73.4
36.1
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
49.4
-0
1.9
65.77
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042880
61058487 - 61063914
5428