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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61083143_61091489_R

Intron Information:

Intron Rank:
140151
Intron Class:
major
Intron Phase:
Intron Coordinates:
61083143 - 61091489
Intron Length:
8347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTGCTTTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.9
31.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
70.2
0.46
1
66.4
38.7
Minor 5ss
34.4
-1.8
2.9
42.3
44.8
Minor BPS
49.4
-0
1.6
60.84
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022780
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037717
61080760 - 61091850
11091