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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61099055_61133111_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61099055 - 61133111
Intron Length:
34057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
HASRVRRQGRMHPNVSQGCQ
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
72.5
37.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
34.7
-1.7
3.2
42
38.7
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
RSPO3
Ensembl Gene ID:
ENSAPLG00000001466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001646
61098326 - 61158382
60057