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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61133304_61134769_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61133304 - 61134769
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTGTTTGCATT
Flanking Amino Acid:
TRYPDINKCAKCKADCETCF
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.7
0.65
0.9
74.5
40
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
45
-0.3
1.9
63.05
42.5

Associated Gene:

Gene:
RSPO3
Ensembl Gene ID:
ENSAPLG00000001466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001646
61098326 - 61158382
60057