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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61134917_61137257_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61134917 - 61137257
Intron Length:
2341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCTAT
U12 Branch Point Sequence:
CTTGTCCTATGT
Flanking Amino Acid:
NNHTMECTSIVHCEASEWSP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
66.6
44.7
Major BPS
51
0.03
1.4
52.4
44.8
Major PPT
79.1
0.65
1
73.4
41.3
Minor 5ss
35
-1.7
2.9
43.7
43.2
Minor BPS
43.1
-0.4
2.2
63.33
47.1

Associated Gene:

Gene:
RSPO3
Ensembl Gene ID:
ENSAPLG00000001466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001646
61098326 - 61158382
60057