Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61205775_61224022_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61205775 - 61224022

Intron Length:

18248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATTA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCATTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTCCATTGACA

Flanking Amino Acid:

GAELTTACDFRLMTPGSEIR

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.7

86.9

22.8

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

76.7

0.6

72.8

36.5

Minor 5ss

41.5

-0.9

3.1

48.2

Minor BPS

69.9

0.62

1.6

81.81

32.3

Associated Gene:

Gene:

ECHDC1

Ensembl Gene ID:

ENSAPLG00000015714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016384

61204984 - 61242331

37348