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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61224104_61226056_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61224104 - 61226056
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAAGAATTAATT
Flanking Amino Acid:
FMQNTLIRLMRLPLISVALI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75
0.56
0.8
72.6
32.1
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
47.8
-0
1.8
63.04
40.6

Associated Gene:

Gene:
ECHDC1
Ensembl Gene ID:
ENSAPLG00000015714
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016384
61204984 - 61242331
37348