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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61226110_61229666_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61226110 - 61229666
Intron Length:
3557

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTTTGAATT
Flanking Amino Acid:
NTVKAIPNSQDGMNMCMFMQ
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
92
25.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.2
0.7
0.8
76.5
32
Minor 5ss
27.1
-2.6
3.8
42.5
44.3
Minor BPS
61.1
0.43
1.4
73.08
38.4

Associated Gene:

Gene:
ECHDC1
Ensembl Gene ID:
ENSAPLG00000015714
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016384
61204984 - 61242331
37348