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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61236096_61242090_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61236096 - 61242090
Intron Length:
5995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
CAAAGCAAAATT
Flanking Amino Acid:
HSWSRAGLRAEMAVSLCKKI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
70.3
35.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
90.3
0.91
0.6
83.6
31.5
Minor 5ss
28
-2.5
3.2
36
40.9
Minor BPS
39
-0.7
2.1
51.44
42.9

Associated Gene:

Gene:
ECHDC1
Ensembl Gene ID:
ENSAPLG00000015714
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016384
61204984 - 61242331
37348