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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61293428_61294560_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61293428 - 61294560
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CATCCCTAAAAT
Flanking Amino Acid:
EEIRKKSNHRRMKSLPFLGE
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.7
0.69
0.9
73.4
41
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
55.7
0.26
1.8
72.09
44.2

Associated Gene:

Gene:
KIAA0408
Ensembl Gene ID:
ENSAPLG00000015660
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016318
61289950 - 61303322
13373
ENSAPLT00000016320
61289950 - 61310364
20415