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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61295329_61297608_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61295329 - 61297608
Intron Length:
2280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTCTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATA
Flanking Amino Acid:
WKVMQKKIEELYQEVKLRRE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
71
40.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
36.8
-1.5
3.2
50.5
45.7
Minor BPS
59.7
0.3
1.6
68.68
38.1

Associated Gene:

Gene:
KIAA0408
Ensembl Gene ID:
ENSAPLG00000015660
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016320
61289950 - 61310364
20415
ENSAPLT00000016318
61289950 - 61303322
13373