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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61366052_61370344_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61366052 - 61370344
Intron Length:
4293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTCTTTCATT
Flanking Amino Acid:
PLQHGWQFRTGRLADPSSVT
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
0.9
81.2
35.2
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
61.7
0.45
1.7
76.34
41.1

Associated Gene:

Gene:
C6orf58
Ensembl Gene ID:
ENSAPLG00000015497
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016142
61361451 - 61376676
15226
ENSAPLT00000046619
61365225 - 61380041
14817