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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61389154_61393919_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61389154 - 61393919
Intron Length:
4766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCCTGTTTCACC
Flanking Amino Acid:
RNKDILSEDRRDI*
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
48.4
-0.1
2.2
60.93
45.2

Associated Gene:

Gene:
THEMIS
Ensembl Gene ID:
ENSAPLG00000015423
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045448
61389144 - 61476830
87687
ENSAPLT00000033533
61389144 - 61476830
87687
ENSAPLT00000016067
61389144 - 61476830
87687