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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61394077_61403375_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61394077 - 61403375
Intron Length:
9299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGATTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCCTTACAG
Flanking Amino Acid:
PTLVEAAVIKGLTNNPLGKW
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
80.2
30.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.2
0.43
1
66.2
44.1
Minor 5ss
34.9
-1.7
2.7
40.9
45.4
Minor BPS
64.5
0.32
1.8
71.23
41.5

Associated Gene:

Gene:
THEMIS
Ensembl Gene ID:
ENSAPLG00000015423
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033533
61389144 - 61476830
87687
ENSAPLT00000016067
61389144 - 61476830
87687
ENSAPLT00000045448
61389144 - 61476830
87687