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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61403530_61446780_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61403530 - 61446780
Intron Length:
43251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATGTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTATGTAATT
Flanking Amino Acid:
VISDVLQATKNFCVDTTKKS
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.7
0.58
1
71.5
42.8
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
52.1
0.14
2.2
76.08
41.4

Associated Gene:

Gene:
THEMIS
Ensembl Gene ID:
ENSAPLG00000015423
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045448
61389144 - 61476830
87687
ENSAPLT00000033533
61389144 - 61476830
87687
ENSAPLT00000016067
61389144 - 61476830
87687