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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61495231_61497659_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61495231 - 61497659
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
NSKPNMVETPEQYRFCYDIA
Intron Amino Acid Position:
1399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.9
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70
0.45
1
69.8
28.4
Minor 5ss
40.1
-1.1
2.8
51
45.2
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000025205
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694