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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61497796_61499143_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61497796 - 61499143
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTTGCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGACATTTAATC
Flanking Amino Acid:
EGEGRTIIHCLNGGGRSGMF
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.8
0.65
0.9
73
36.5
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
56.3
0.18
1.5
62.68
36.3

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025205
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694