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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61519166_61520893_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61519166 - 61520893
Intron Length:
1728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTTATA
Flanking Amino Acid:
DSYGFKEEYESFFEGQSASW
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.1
0.88
0.7
85
28.6
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
58.4
0.26
1.9
75.79
35

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000025205
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694