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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61521079_61527250_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61521079 - 61527250
Intron Length:
6172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTCTTGTGAACG
Flanking Amino Acid:
FMDSHNFSPRYENHSATAES
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
65
0.34
1
58.8
40.9
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
49.8
-0.1
2.2
63.41
44.6

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025205
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694