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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61522248_61525183_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
61522248 - 61525183
Intron Length:
2936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CAATGGGTTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGTTCACTCATT
Flanking Amino Acid:
NDPLVPTAVLVPITDENHSA
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
50.8
0.02
1.2
47.6
43.7
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
47.6
-0.1
2.3
74.83
41.8

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040009
61495177 - 61906870
411694