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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61571574_61578881_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61571574 - 61578881
Intron Length:
7308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTCCCTTTAAAG
Flanking Amino Acid:
RPAQAKGAPISAYQIVVEEL
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
78
0.63
1
72.6
42.4
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
58.1
0.12
1.5
58.87
42.6

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000025205
61495177 - 61906870
411694