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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61583954_61594350_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61583954 - 61594350
Intron Length:
10397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTATTTTTAAAC
Flanking Amino Acid:
EETIIQTDEDVPGPIPAKSV
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.4
0.73
0.8
77.7
36
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
63.6
0.41
1.4
67.66
38

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000014135
61495177 - 61906870
411694