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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61594654_61669851_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61594654 - 61669851
Intron Length:
75198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CTTTGGTTTACT
Flanking Amino Acid:
PPLITRTKCAEPMRTPKTLK
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
77.2
0.61
0.9
69.4
41.4
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
47.2
-0.1
2.7
75.67
46.9

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694