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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61704985_61717287_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61704985 - 61717287
Intron Length:
12303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
TCTTACAAGATA
Flanking Amino Acid:
DAVNNKLWLQRRNGEDIPVA
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
44.8
-0.4
2.1
59.88
40.3

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000025205
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694