About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61717404_61719229_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61717404 - 61719229
Intron Length:
1826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCACCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTATTTGTAATT
Flanking Amino Acid:
DDIQVLSYPCDKSPHFLRLG
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
75.7
0.58
0.8
69
31.3
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
52.3
0.15
2
71.31
40.8

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025205
61495177 - 61906870
411694
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000014135
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694