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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61770549_61906758_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61770549 - 61906758
Intron Length:
136210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTTATTT
Flanking Amino Acid:
PGAARAQLSAGSYMIVISSD
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
72.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.7
76.5
25.6
Minor 5ss
29.1
-2.4
2.8
35.6
41
Minor BPS
58.4
0.34
1.5
71.47
40.5

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014135
61495177 - 61906870
411694