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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61818207_61906758_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61818207 - 61906758
Intron Length:
88552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAACTAATAACA
Flanking Amino Acid:
PGAARAQLSAGGCTFDDGPG
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
72.2
39.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.2
0.72
0.7
77.8
31
Minor 5ss
29.1
-2.4
2.8
35.6
41
Minor BPS
47.9
-0.1
1.8
61.48
37.3

Associated Gene:

Gene:
PTPRK
Ensembl Gene ID:
ENSAPLG00000013431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018538
61495177 - 61906870
411694
ENSAPLT00000040009
61495177 - 61906870
411694
ENSAPLT00000032740
61495177 - 61906870
411694
ENSAPLT00000025205
61495177 - 61906870
411694