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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_61909115_61911371_F

Intron Information:

Intron Rank:
138496
Intron Class:
major
Intron Phase:
Intron Coordinates:
61909115 - 61911371
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTCTTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.4
31.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.6
0.71
0.7
76.4
25.6
Minor 5ss
39.2
-1.2
3
54
43.2
Minor BPS
51.8
0.04
1.6
62.27
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023164
61908743 - 61932800
24058