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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62110425_62115229_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62110425 - 62115229
Intron Length:
4805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
GTTACTCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTACTCTAACA
Flanking Amino Acid:
ICDQRSRVPHQRHPITNAID
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.27
1.4
58.8
40.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72
0.49
1
66.3
39.5
Minor 5ss
33.4
-1.9
3.3
41.4
39.6
Minor BPS
61.8
0.37
1.7
73.91
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000041524
62110286 - 62273607
163322
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308
ENSAPLT00000047456
62110304 - 62327611
217308